Variant report

Variant	rs74094251
Chromosome Location	chr1:75803621-75803622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11163144	0.93[AFR][1000 genomes]
rs11163172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11803750	1.00[AMR][1000 genomes]
rs12078524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74094249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013952	chr1:75716654-75936048	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv535004	chr1:75716654-75936048	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75797400-75804600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:75799800-75803800	Weak transcription	Fetal Brain Male	brain
3	chr1:75800600-75805000	Weak transcription	HepG2	liver
4	chr1:75803400-75805400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:75803400-75806800	Enhancers	Fetal Brain Female	brain
6	chr1:75803600-75804400	Weak transcription	Psoas Muscle	Psoas
7	chr1:75803600-75804600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:75803600-75805200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr1:75803600-75807800	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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