Variant report
| Variant | rs74094350 |
|---|---|
| Chromosome Location | chr12:60791426-60791427 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:60790028..60792410-chr12:60842301..60844281,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11831587 | 0.80[AFR][1000 genomes] |
| rs11832232 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12579713 | 0.80[AFR][1000 genomes] |
| rs55905809 | 0.80[AFR][1000 genomes] |
| rs56158317 | 0.80[AFR][1000 genomes] |
| rs56178609 | 0.80[AFR][1000 genomes] |
| rs57533761 | 0.80[AFR][1000 genomes] |
| rs57848253 | 0.80[AFR][1000 genomes] |
| rs7310477 | 0.80[AFR][1000 genomes] |
| rs73114791 | 0.80[AFR][1000 genomes] |
| rs73120658 | 0.80[AFR][1000 genomes] |
| rs74093450 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74093457 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74093706 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74093715 | 1.00[AMR][1000 genomes] |
| rs867948 | 0.80[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899137 | chr12:60568891-60797083 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1054287 | chr12:60601870-60861866 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv832431 | chr12:60626292-60809233 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1047466 | chr12:60702221-61521156 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 5 | esv3351746 | chr12:60788685-60793483 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60789800-60792200 | Weak transcription | Hela-S3 | cervix |
