Variant report

Variant	rs74094382
Chromosome Location	chr1:75714186-75714187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10493561	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117429	1.00[ASN][1000 genomes]
rs12132601	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1319656	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405312	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526516	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17565565	1.00[ASN][1000 genomes]
rs17640591	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4949821	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4949838	0.88[EUR][1000 genomes]
rs595009	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs607167	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs610159	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659170	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs677470	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679258	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs684117	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997508	chr1:75709664-75748920	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75701200-75715800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:75710600-75714600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:75711800-75718800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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