Variant report

Variant	rs74094531
Chromosome Location	chr12:59452002-59452003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17121951	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17122004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17122012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41341248	1.00[AMR][1000 genomes]
rs60583762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74091473	1.00[AMR][1000 genomes]
rs74091483	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74091488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74094541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043385	chr12:59149582-59758952	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1067596	chr12:59167152-59764208	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv492251	chr12:59167152-59764208	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1047257	chr12:59444966-59520330	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1050662	chr12:59444966-59526442	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:59448200-59452600	Weak transcription	Fetal Stomach	stomach
2	chr12:59448400-59453600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:59449000-59459800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:59450000-59453400	Weak transcription	HSMMtube	muscle
5	chr12:59450000-59461000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:59450000-59464000	Weak transcription	Hela-S3	cervix
7	chr12:59450200-59459400	Weak transcription	HMEC	breast
8	chr12:59451000-59456400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:59451000-59459200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:59451200-59459000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:59451400-59453000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:59451400-59453000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:59451400-59453600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:59451600-59453200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:59451800-59452200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:59451800-59453600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr12:59452000-59453600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr12:59452000-59455400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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