Variant report

Variant	rs74095757
Chromosome Location	chr12:58345345-58345346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:58339956..58342455-chr12:58344235..58346244,2	MCF-7	breast:
2	chr12:2293118..2295829-chr12:58345245..58347377,2	MCF-7	breast:
3	chr12:58335319..58338203-chr12:58340129..58346317,10	K562	blood:
4	chr12:58343666..58345646-chr12:58346794..58349632,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166896	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56009009	1.00[AFR][1000 genomes]
rs74094227	1.00[AFR][1000 genomes]
rs74096250	1.00[AFR][1000 genomes]
rs74097710	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559046	chr12:58162085-58478598	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	261 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58336000-58347600	Weak transcription	Esophagus	oesophagus
2	chr12:58336000-58348400	Weak transcription	Gastric	stomach
3	chr12:58336000-58348600	Weak transcription	Aorta	Aorta
4	chr12:58336000-58348600	Weak transcription	Lung	lung
5	chr12:58336000-58351000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr12:58336000-58351000	Weak transcription	Colon Smooth Muscle	Colon
7	chr12:58336000-58351200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:58336000-58351200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:58336000-58351200	Weak transcription	Spleen	Spleen
10	chr12:58336000-58353000	Weak transcription	Small Intestine	intestine
11	chr12:58336200-58346600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr12:58336200-58346600	Weak transcription	Fetal Muscle Leg	muscle
13	chr12:58336200-58347600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr12:58336200-58350600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr12:58336200-58350600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:58336200-58350800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr12:58336200-58351000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:58336200-58351000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr12:58336200-58351000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr12:58336200-58351200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr12:58336200-58351200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr12:58336200-58351200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr12:58336200-58351200	Weak transcription	Fetal Intestine Small	intestine
24	chr12:58336200-58351200	Weak transcription	Placenta	Placenta
25	chr12:58336200-58351400	Weak transcription	Brain Anterior Caudate	brain
26	chr12:58336200-58351400	Weak transcription	Fetal Lung	lung
27	chr12:58336200-58351600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr12:58336200-58351600	Weak transcription	HUVEC	blood vessel
29	chr12:58336200-58353000	Weak transcription	Stomach Mucosa	stomach
30	chr12:58336200-58353400	Weak transcription	Fetal Kidney	kidney
31	chr12:58336200-58353600	Weak transcription	Brain Substantia Nigra	brain
32	chr12:58336200-58353600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr12:58336200-58353800	Weak transcription	Brain Angular Gyrus	brain
34	chr12:58336200-58353800	Weak transcription	Brain Hippocampus Middle	brain
35	chr12:58336200-58354000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr12:58336200-58354000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr12:58336200-58354000	Weak transcription	Psoas Muscle	Psoas
38	chr12:58336200-58356200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr12:58336200-58359600	Weak transcription	A549	lung
40	chr12:58336400-58351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr12:58336400-58351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr12:58336400-58351200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr12:58336400-58359600	Weak transcription	HMEC	breast
44	chr12:58336800-58346600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr12:58336800-58351200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr12:58336800-58353000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr12:58337000-58350600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr12:58337200-58346400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr12:58337200-58350600	Weak transcription	Primary B cells from peripheral blood	blood
50	chr12:58337200-58351000	Weak transcription	Colonic Mucosa	Colon

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