Variant report

Variant	rs74096889
Chromosome Location	chr12:63064190-63064191
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63060371..63062636-chr12:63063773..63065877,2	K562	blood:
2	chr12:63062986..63065767-chr12:63067965..63070685,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11174637	1.00[EUR][1000 genomes]
rs11174638	1.00[EUR][1000 genomes]
rs11174639	1.00[EUR][1000 genomes]
rs12303297	1.00[EUR][1000 genomes]
rs12303313	1.00[EUR][1000 genomes]
rs12310630	1.00[EUR][1000 genomes]
rs12311698	1.00[EUR][1000 genomes]
rs17098337	1.00[EUR][1000 genomes]
rs56267727	1.00[EUR][1000 genomes]
rs58310965	1.00[EUR][1000 genomes]
rs58490000	1.00[EUR][1000 genomes]
rs61116922	1.00[EUR][1000 genomes]
rs7311838	1.00[EUR][1000 genomes]
rs74096890	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74098826	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv741	chr12:63038255-63064846	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63035200-63069800	Weak transcription	Left Ventricle	heart
2	chr12:63037200-63069600	Weak transcription	Fetal Intestine Large	intestine
3	chr12:63039200-63070000	Weak transcription	Pancreas	Pancrea
4	chr12:63047800-63069600	Weak transcription	Liver	Liver
5	chr12:63049000-63069600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr12:63049000-63070000	Weak transcription	Gastric	stomach
7	chr12:63049200-63070000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:63050000-63070200	Weak transcription	Ovary	ovary
9	chr12:63050800-63066600	Weak transcription	Fetal Stomach	stomach
10	chr12:63051200-63069600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:63052000-63072400	Strong transcription	HepG2	liver
12	chr12:63053800-63069600	Weak transcription	Aorta	Aorta
13	chr12:63054000-63066800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:63054000-63069800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:63054000-63070400	Weak transcription	Brain Substantia Nigra	brain
16	chr12:63054000-63077400	Weak transcription	Brain Anterior Caudate	brain
17	chr12:63054200-63068600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr12:63054600-63070000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr12:63055000-63066800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr12:63055000-63067000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr12:63055000-63067000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:63055200-63077000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr12:63055200-63077200	Weak transcription	Osteobl	bone
24	chr12:63055600-63065600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr12:63056000-63066800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr12:63056000-63069800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr12:63056000-63070400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr12:63056200-63066400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr12:63056400-63066200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr12:63056400-63066600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr12:63057000-63067400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr12:63058800-63070000	Weak transcription	A549	lung
33	chr12:63058800-63071200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr12:63059800-63069600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr12:63060200-63064800	Weak transcription	Fetal Intestine Small	intestine
36	chr12:63061200-63077400	Weak transcription	Brain Angular Gyrus	brain
37	chr12:63061400-63068400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr12:63061600-63068200	Weak transcription	Brain Hippocampus Middle	brain
39	chr12:63061600-63070800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr12:63062600-63067000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr12:63062800-63064600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr12:63063000-63066400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr12:63063000-63066800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr12:63063000-63077000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr12:63064000-63070400	Weak transcription	Duodenum Mucosa	Duodenum

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