Variant report

Variant	rs74097880
Chromosome Location	chr12:66460781-66460782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12299022	1.00[AMR][1000 genomes]
rs12310745	1.00[AMR][1000 genomes]
rs73327347	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv899213	chr12:66389968-66500036	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832446	chr12:66393863-66501484	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1049537	chr12:66403269-66606174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66453800-66460800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:66455800-66461200	Enhancers	NHDF-Ad	bronchial
3	chr12:66457800-66461200	Enhancers	NHLF	lung
4	chr12:66458800-66460800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr12:66458800-66460800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr12:66458800-66460800	Enhancers	NH-A	brain
7	chr12:66458800-66461200	Enhancers	Primary hematopoietic stem cells	blood
8	chr12:66459400-66461000	Enhancers	Fetal Brain Male	brain
9	chr12:66459400-66461200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr12:66459400-66461600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr12:66459600-66460800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr12:66459600-66460800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr12:66459600-66461000	Enhancers	Fetal Brain Female	brain
14	chr12:66459800-66460800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:66460000-66460800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:66460000-66460800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:66460000-66460800	Enhancers	Aorta	Aorta
18	chr12:66460000-66460800	Enhancers	Fetal Muscle Leg	muscle
19	chr12:66460000-66460800	Enhancers	Pancreas	Pancrea
20	chr12:66460000-66460800	Enhancers	HSMM	muscle
21	chr12:66460000-66461000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr12:66460000-66461200	Enhancers	Primary B cells from peripheral blood	blood
23	chr12:66460000-66461200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr12:66460000-66461400	Flanking Active TSS	GM12878-XiMat	blood
25	chr12:66460200-66460800	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr12:66460200-66460800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr12:66460200-66460800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr12:66460200-66460800	Enhancers	Brain Germinal Matrix	brain
29	chr12:66460200-66461000	Enhancers	Fetal Kidney	kidney
30	chr12:66460200-66461000	Enhancers	Osteobl	bone
31	chr12:66460200-66461200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr12:66460200-66461400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr12:66460400-66460800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr12:66460400-66460800	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr12:66460400-66460800	Enhancers	Primary B cells from cord blood	blood
36	chr12:66460400-66460800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr12:66460400-66460800	Flanking Active TSS	HepG2	liver
38	chr12:66460400-66461000	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr12:66460600-66460800	Enhancers	Brain Angular Gyrus	brain
40	chr12:66460600-66461000	Enhancers	Primary T helper cells PMA-I stimulated	--

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