Variant report

Variant	rs74097886
Chromosome Location	chr12:66486877-66486878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:66482001..66484990-chr12:66485106..66488023,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11465963	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56914246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59800391	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097897	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097899	1.00[AMR][1000 genomes]
rs74097900	1.00[AMR][1000 genomes]
rs74097901	1.00[AMR][1000 genomes]
rs74097902	1.00[AMR][1000 genomes]
rs74100103	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv899213	chr12:66389968-66500036	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832446	chr12:66393863-66501484	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1049537	chr12:66403269-66606174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66486000-66487000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr12:66486000-66487200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr12:66486000-66487200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr12:66486000-66487200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:66486400-66487000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr12:66486400-66487000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:66486400-66487000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:66486400-66487000	Enhancers	Aorta	Aorta
9	chr12:66486400-66487000	Enhancers	Fetal Kidney	kidney
10	chr12:66486400-66487000	Enhancers	HUVEC	blood vessel
11	chr12:66486400-66487000	Enhancers	NH-A	brain
12	chr12:66486400-66487200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:66486400-66487200	Enhancers	GM12878-XiMat	blood
14	chr12:66486400-66487200	Enhancers	NHDF-Ad	bronchial
15	chr12:66486600-66487000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr12:66486600-66487000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr12:66486600-66487000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr12:66486600-66487000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr12:66486600-66487000	Flanking Active TSS	Osteobl	bone
20	chr12:66486600-66487200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr12:66486600-66487200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr12:66486800-66487000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr12:66486800-66487200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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