Variant report

Variant	rs74098505
Chromosome Location	chr12:60495298-60495299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs60251549	0.86[AFR][1000 genomes]
rs74095926	0.86[AFR][1000 genomes]
rs74095990	0.86[AFR][1000 genomes]
rs74095991	1.00[AFR][1000 genomes]
rs74095997	1.00[AFR][1000 genomes]
rs74096000	1.00[AFR][1000 genomes]
rs74096001	1.00[AFR][1000 genomes]
rs74098535	0.86[AFR][1000 genomes]
rs74098541	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048137	chr12:60432594-60515455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2760273	chr12:60489188-60561925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv826394	chr12:60491264-60516940	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60494400-60495800	Enhancers	HMEC	breast
2	chr12:60494400-60496000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:60494400-60496000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr12:60494400-60496000	Enhancers	NHDF-Ad	bronchial
5	chr12:60494600-60495800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr12:60494600-60495800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:60494800-60495800	Enhancers	NHEK	skin
8	chr12:60495000-60495800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:60495000-60495800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr12:60495000-60495800	Enhancers	Stomach Mucosa	stomach
11	chr12:60495200-60495800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:60495200-60495800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:60495200-60496200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links