Variant report

Variant	rs74098854
Chromosome Location	chr12:63179524-63179525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:62995348..62998836-chr12:63178940..63181391,3	K562	blood:
2	chr12:62995008..63000778-chr12:63178750..63184772,7	MCF-7	breast:
3	chr12:62995127..63000683-chr12:63174450..63183073,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000221949	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11174653	1.00[AMR][1000 genomes]
rs12296629	1.00[AMR][1000 genomes]
rs12322519	1.00[AMR][1000 genomes]
rs28634479	1.00[AMR][1000 genomes]
rs7300333	1.00[AMR][1000 genomes]
rs73314579	1.00[AMR][1000 genomes]
rs73314581	1.00[AMR][1000 genomes]
rs73314583	1.00[AMR][1000 genomes]
rs74098847	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899160	chr12:63149213-63209623	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63150000-63179800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:63161400-63180000	Weak transcription	Aorta	Aorta
3	chr12:63165600-63182000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr12:63166600-63179600	Weak transcription	NHLF	lung
5	chr12:63168200-63180000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:63171400-63180000	Weak transcription	Colonic Mucosa	Colon
7	chr12:63171400-63180000	Weak transcription	Fetal Intestine Large	intestine
8	chr12:63174800-63182800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:63175000-63179800	Weak transcription	Spleen	Spleen
10	chr12:63175200-63193600	Weak transcription	Gastric	stomach
11	chr12:63175200-63206800	Weak transcription	Pancreas	Pancrea
12	chr12:63175400-63180000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:63175600-63179600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:63175600-63179600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:63175600-63180000	Weak transcription	Fetal Intestine Small	intestine
16	chr12:63176600-63180200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr12:63176800-63179600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr12:63177000-63182600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr12:63177400-63181600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr12:63177600-63179600	Weak transcription	HSMMtube	muscle
21	chr12:63177800-63179800	Enhancers	HMEC	breast
22	chr12:63177800-63180600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr12:63177800-63181800	Enhancers	NH-A	brain
24	chr12:63178000-63179800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:63178000-63180000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr12:63178000-63185400	Weak transcription	Fetal Brain Male	brain
27	chr12:63178200-63179600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr12:63178200-63179600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr12:63178200-63179800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr12:63178200-63179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr12:63178200-63179800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr12:63178200-63179800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr12:63178200-63180000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr12:63178200-63180000	Weak transcription	Lung	lung
35	chr12:63178200-63180000	Weak transcription	Right Atrium	heart
36	chr12:63178200-63180400	Weak transcription	Brain Anterior Caudate	brain
37	chr12:63178200-63180800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr12:63178200-63187000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr12:63178400-63179600	Enhancers	Muscle Satellite Cultured Cells	--
40	chr12:63178400-63179600	Weak transcription	NHDF-Ad	bronchial
41	chr12:63178400-63182400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr12:63178400-63186200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr12:63178400-63192400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr12:63178600-63186200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr12:63178800-63179800	Weak transcription	Brain Hippocampus Middle	brain
46	chr12:63178800-63180000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr12:63178800-63182200	Weak transcription	Brain Substantia Nigra	brain
48	chr12:63179000-63181000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr12:63179200-63180400	Flanking Active TSS	A549	lung
50	chr12:63179200-63181600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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