Variant report

Variant	rs74099371
Chromosome Location	chr12:64322882-64322883
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64321248..64323629-chr12:64327689..64329232,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57138272	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv832442	chr12:64228071-64442771	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64298800-64334000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:64312200-64324200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr12:64312400-64331600	Weak transcription	Right Atrium	heart
4	chr12:64312400-64385000	Weak transcription	Aorta	Aorta
5	chr12:64312800-64324200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:64312800-64324600	Weak transcription	Fetal Lung	lung
7	chr12:64312800-64331200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr12:64312800-64331400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr12:64313000-64334400	Weak transcription	Psoas Muscle	Psoas
10	chr12:64313200-64330600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:64313200-64331600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:64313200-64331600	Weak transcription	Left Ventricle	heart
13	chr12:64313200-64334400	Weak transcription	Pancreas	Pancrea
14	chr12:64314200-64331200	Weak transcription	Brain Substantia Nigra	brain
15	chr12:64316600-64338400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:64317000-64324600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr12:64317000-64324800	Weak transcription	HSMMtube	muscle
18	chr12:64317200-64327800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr12:64319000-64323400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr12:64319000-64331200	Weak transcription	Brain Anterior Caudate	brain
21	chr12:64319800-64324000	Weak transcription	Fetal Brain Female	brain
22	chr12:64319800-64331600	Weak transcription	Right Ventricle	heart
23	chr12:64321200-64324200	Weak transcription	Fetal Brain Male	brain
24	chr12:64322200-64323000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:64322200-64323000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr12:64322200-64323000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr12:64322200-64323000	Enhancers	GM12878-XiMat	blood
28	chr12:64322200-64324200	Enhancers	NHDF-Ad	bronchial
29	chr12:64322200-64327800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:64322400-64323600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr12:64322600-64323000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr12:64322600-64323000	ZNF genes & repeats	HSMM	muscle
33	chr12:64322600-64323800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr12:64322600-64326000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr12:64322600-64326000	Enhancers	NHEK	skin
36	chr12:64322800-64323000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr12:64322800-64323000	Enhancers	Lung	lung
38	chr12:64322800-64323000	Enhancers	Ovary	ovary
39	chr12:64322800-64323400	Enhancers	A549	lung
40	chr12:64322800-64323400	Enhancers	HMEC	breast
41	chr12:64322800-64323600	Enhancers	NHLF	lung
42	chr12:64322800-64324600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr12:64322800-64325800	Enhancers	Osteobl	bone

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