Variant report

Variant	rs74100634
Chromosome Location	chr1:91953120-91953121
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1395471	1.00[AMR][1000 genomes]
rs17131470	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58020898	1.00[AMR][1000 genomes]
rs60146076	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:91952800-91953400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr1:91952800-91953600	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr1:91953000-91953400	Enhancers	Primary T cells from cord blood	blood
4	chr1:91953000-91953400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr1:91953000-91953600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:91953000-91953600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:91953000-91953600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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