Variant report

Variant	rs74100977
Chromosome Location	chr1:92057075-92057076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:92049157..92050899-chr1:92056086..92058376,2	K562	blood:
2	chr1:92056853..92058906-chr1:92058997..92061738,3	K562	blood:
3	chr1:92032150..92035009-chr1:92057004..92058945,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55840900	1.00[AMR][1000 genomes]
rs56104018	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92049600-92061600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:92051600-92058000	Weak transcription	Right Ventricle	heart
3	chr1:92051600-92060000	Weak transcription	Lung	lung
4	chr1:92051800-92058200	Weak transcription	Right Atrium	heart
5	chr1:92051800-92067600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:92054400-92057400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:92054600-92057200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:92055000-92057400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:92055000-92060800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:92055400-92061200	Enhancers	Ovary	ovary
11	chr1:92055600-92061400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:92055800-92057200	Enhancers	Placenta	Placenta
13	chr1:92055800-92076400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:92056000-92058400	Enhancers	Fetal Thymus	thymus
15	chr1:92056000-92062200	Enhancers	Fetal Heart	heart
16	chr1:92056200-92057400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr1:92056400-92057200	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr1:92056400-92057200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:92056400-92057400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr1:92056400-92057400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr1:92056400-92057600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr1:92056400-92057600	Enhancers	Dnd41	blood
23	chr1:92056400-92058200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr1:92056400-92058600	Weak transcription	Fetal Stomach	stomach
25	chr1:92056600-92057600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr1:92056600-92057600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr1:92056800-92057200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr1:92056800-92057200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr1:92056800-92057200	Active TSS	Primary B cells from cord blood	blood
30	chr1:92056800-92057200	Enhancers	Brain Cingulate Gyrus	brain
31	chr1:92056800-92057200	Enhancers	Fetal Muscle Trunk	muscle
32	chr1:92056800-92057200	Enhancers	Psoas Muscle	Psoas
33	chr1:92056800-92057200	Flanking Active TSS	HepG2	liver
34	chr1:92056800-92057400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr1:92056800-92057400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr1:92056800-92057400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr1:92056800-92057400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr1:92056800-92057400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr1:92056800-92057400	Enhancers	Liver	Liver
40	chr1:92056800-92057400	Enhancers	Left Ventricle	heart
41	chr1:92056800-92057400	Enhancers	GM12878-XiMat	blood
42	chr1:92056800-92057600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr1:92056800-92057600	Enhancers	Colon Smooth Muscle	Colon
44	chr1:92056800-92057600	Flanking Active TSS	Duodenum Mucosa	Duodenum
45	chr1:92056800-92057600	Flanking Active TSS	K562	blood
46	chr1:92056800-92057800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr1:92056800-92058200	Enhancers	Thymus	Thymus
48	chr1:92056800-92058400	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr1:92056800-92060000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr1:92057000-92057200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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