Variant report

Variant	rs74101674
Chromosome Location	chr1:94164499-94164500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94163111..94165916-chr1:94167834..94169429,2	MCF-7	breast:
2	chr1:94157790..94160222-chr1:94162469..94164746,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DNTTIP2-1	chr1:94164464-94164538	NONHSAT004544

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17110195	1.00[ASN][1000 genomes]
rs17110198	1.00[ASN][1000 genomes]
rs17110248	1.00[ASN][1000 genomes]
rs17110252	1.00[ASN][1000 genomes]
rs17110298	1.00[ASN][1000 genomes]
rs41292657	1.00[ASN][1000 genomes]
rs56072327	1.00[ASN][1000 genomes]
rs56369705	1.00[ASN][1000 genomes]
rs57866435	1.00[ASN][1000 genomes]
rs59232020	1.00[ASN][1000 genomes]
rs74101645	1.00[ASN][1000 genomes]
rs74101646	1.00[ASN][1000 genomes]
rs74101655	1.00[ASN][1000 genomes]
rs74101658	1.00[ASN][1000 genomes]
rs74101664	1.00[ASN][1000 genomes]
rs74101673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482370	chr1:94000799-94183692	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2755338	chr1:94059579-94176079	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94148200-94167200	Weak transcription	Right Atrium	heart
2	chr1:94153800-94171600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:94155600-94171000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:94157200-94165400	Weak transcription	Pancreas	Pancrea
5	chr1:94157400-94167600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:94158400-94165200	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:94158400-94166600	Weak transcription	Gastric	stomach
8	chr1:94158400-94168200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:94158800-94166400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:94159000-94173600	Weak transcription	Fetal Intestine Small	intestine
11	chr1:94159400-94165000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr1:94159600-94166200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:94159600-94173800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:94160600-94164800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:94160600-94166000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:94160600-94166400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:94160600-94167200	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:94160600-94171000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:94160800-94165000	Weak transcription	Lung	lung
20	chr1:94160800-94165400	Weak transcription	Spleen	Spleen
21	chr1:94161200-94166600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr1:94161200-94168400	Weak transcription	Fetal Kidney	kidney
23	chr1:94161400-94166000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:94161400-94166200	Weak transcription	A549	lung
25	chr1:94161400-94166200	Weak transcription	NHDF-Ad	bronchial
26	chr1:94161600-94164800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr1:94161600-94166000	Weak transcription	HSMM	muscle
28	chr1:94161600-94166200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:94161600-94167200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:94161600-94173800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr1:94162000-94165800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr1:94162000-94167800	Weak transcription	Adipose Nuclei	Adipose
33	chr1:94162200-94165000	Weak transcription	Placenta	Placenta
34	chr1:94162200-94167200	Weak transcription	Primary B cells from cord blood	blood
35	chr1:94162400-94164800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr1:94162400-94166200	Weak transcription	Hela-S3	cervix
37	chr1:94162400-94167200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr1:94163000-94166600	Weak transcription	GM12878-XiMat	blood
39	chr1:94163000-94171400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr1:94163600-94164600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr1:94163600-94167600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr1:94163800-94165800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:94163800-94165800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr1:94163800-94166400	Enhancers	NHEK	skin
45	chr1:94163800-94171000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr1:94164000-94164600	Enhancers	Esophagus	oesophagus
47	chr1:94164000-94164800	Enhancers	K562	blood
48	chr1:94164000-94170000	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr1:94164000-94170400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:94164000-94172200	Enhancers	HMEC	breast

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