Variant report

Variant	rs74101813
Chromosome Location	chr1:95096704-95096705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2893271	1.00[AFR][1000 genomes]
rs74101810	1.00[AFR][1000 genomes]
rs74101811	1.00[AFR][1000 genomes]
rs74101812	1.00[AFR][1000 genomes]
rs74101817	1.00[AFR][1000 genomes]
rs74101818	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv519997	chr1:95083836-95113417	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1001230	chr1:95085184-95108531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95089800-95100000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:95089800-95100400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:95090000-95102800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:95090200-95099600	Weak transcription	Fetal Stomach	stomach
5	chr1:95090800-95100600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:95091600-95100400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:95095400-95099000	Weak transcription	Pancreas	Pancrea
8	chr1:95095400-95100600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:95095400-95100600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:95095400-95100600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:95095800-95098600	Weak transcription	Ovary	ovary
12	chr1:95095800-95099400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:95095800-95101400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:95095800-95102200	Weak transcription	Fetal Intestine Small	intestine
15	chr1:95095800-95108400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:95096000-95098400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:95096000-95100400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr1:95096600-95100600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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