Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11800449	1.00[EUR][1000 genomes]
rs12084754	1.00[EUR][1000 genomes]
rs12086439	1.00[EUR][1000 genomes]
rs12092397	1.00[EUR][1000 genomes]
rs17113320	1.00[AMR][1000 genomes]
rs17113340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3898816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41327447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4456144	1.00[EUR][1000 genomes]
rs55905678	1.00[AMR][1000 genomes]
rs56020320	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs58341845	1.00[AMR][1000 genomes]
rs58638874	1.00[AMR][1000 genomes]
rs6672243	1.00[EUR][1000 genomes]
rs6692685	1.00[AMR][1000 genomes]
rs74103457	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74104823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9659646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9660612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830648	chr1:95760162-95926264	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1006113	chr1:95768502-96139003	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv529002	chr1:95781217-95805002	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95769200-95782000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:95774400-95786800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:95777000-95786800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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