Variant report

Variant	rs74105177
Chromosome Location	chr12:84368110-84368111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11829990	1.00[AMR][1000 genomes]
rs11830632	1.00[AMR][1000 genomes]
rs11835937	1.00[AMR][1000 genomes]
rs11838334	1.00[AMR][1000 genomes]
rs55778413	1.00[AMR][1000 genomes]
rs56181143	1.00[AMR][1000 genomes]
rs57326082	1.00[AMR][1000 genomes]
rs58064044	1.00[AMR][1000 genomes]
rs60934342	1.00[AMR][1000 genomes]
rs67246516	1.00[AMR][1000 genomes]
rs74103238	1.00[AMR][1000 genomes]
rs74105125	1.00[AMR][1000 genomes]
rs74105134	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105171	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105174	1.00[AFR][1000 genomes]
rs74106913	1.00[AMR][1000 genomes]
rs74106929	1.00[AMR][1000 genomes]
rs74106931	1.00[AMR][1000 genomes]
rs74107575	1.00[AMR][1000 genomes]
rs74107577	1.00[AMR][1000 genomes]
rs74107578	1.00[AMR][1000 genomes]
rs74107580	1.00[AMR][1000 genomes]
rs74107581	1.00[AMR][1000 genomes]
rs74107582	1.00[AMR][1000 genomes]
rs74108914	1.00[AMR][1000 genomes]
rs74109428	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559563	chr12:84017043-84450824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1037138	chr12:84035912-84429867	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541553	chr12:84035912-84429867	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1035818	chr12:84040289-84452115	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv559564	chr12:84042109-84441408	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1035252	chr12:84043334-84446432	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1041804	chr12:84050772-84466603	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1039889	chr12:84053336-84426064	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv541554	chr12:84053336-84426064	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv899361	chr12:84189646-84729668	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv3398276	chr12:84238465-84404040	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1036812	chr12:84260079-84387371	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv541555	chr12:84260079-84387371	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:84367400-84368200	Enhancers	H9 Cell Line	embryonic stem cell
2	chr12:84368000-84368400	Enhancers	Brain Angular Gyrus	brain

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