Variant report

Variant	rs74105310
Chromosome Location	chr1:95692107-95692108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs74102206	1.00[AFR][1000 genomes]
rs74103700	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95670600-95698200	Weak transcription	Aorta	Aorta
2	chr1:95673400-95692800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:95681000-95692200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:95682400-95693800	Weak transcription	Pancreas	Pancrea
5	chr1:95682600-95698000	Weak transcription	Fetal Intestine Large	intestine
6	chr1:95684400-95694600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:95684800-95693600	Weak transcription	Left Ventricle	heart
8	chr1:95687000-95692600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:95687600-95695600	Weak transcription	Liver	Liver
10	chr1:95688800-95692600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:95688800-95698800	Weak transcription	Psoas Muscle	Psoas
12	chr1:95689200-95692600	Weak transcription	Adipose Nuclei	Adipose
13	chr1:95689200-95698000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:95689400-95692200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:95689400-95692800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:95689400-95698200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:95689600-95692400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:95691400-95692800	Enhancers	Brain Hippocampus Middle	brain
19	chr1:95691600-95692400	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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