Variant report

Variant	rs741064
Chromosome Location	chr7:150500729-150500730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150418208..150420407-chr7:150499249..150501046,2	K562	blood:
2	chr7:150490163..150495069-chr7:150496481..150500897,6	K562	blood:
3	chr14:103799690..103801722-chr7:150499990..150502552,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABP1-3	chr7:150499144-150500920	NONHSAT124157

Variant related genes	Relation type
ENSG00000100664	Chromatin interaction
ENSG00000106565	Chromatin interaction
ENSG00000196329	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11772167	0.88[CEU][hapmap];0.95[GIH][hapmap];0.81[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs717657	0.88[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7785283	0.86[CEU][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150498600-150500800	Weak transcription	Right Atrium	heart
2	chr7:150498800-150501600	Enhancers	Placenta	Placenta
3	chr7:150498800-150502800	Weak transcription	Gastric	stomach
4	chr7:150498800-150503000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:150499200-150501000	Genic enhancers	Fetal Intestine Large	intestine
6	chr7:150499200-150501200	Transcr. at gene 5' and 3'	Liver	Liver
7	chr7:150499400-150501000	Genic enhancers	Fetal Muscle Leg	muscle
8	chr7:150499400-150501000	Enhancers	Right Ventricle	heart
9	chr7:150499400-150501000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
10	chr7:150499400-150503000	Strong transcription	Ovary	ovary
11	chr7:150499600-150501000	Genic enhancers	Fetal Intestine Small	intestine
12	chr7:150499600-150501000	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
13	chr7:150499600-150501800	Weak transcription	Pancreas	Pancrea
14	chr7:150499600-150502800	Weak transcription	Esophagus	oesophagus
15	chr7:150499800-150500800	Genic enhancers	Rectal Smooth Muscle	rectum
16	chr7:150499800-150501400	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
17	chr7:150499800-150501400	Weak transcription	Spleen	Spleen
18	chr7:150499800-150501800	Genic enhancers	Fetal Muscle Trunk	muscle
19	chr7:150499800-150502600	Weak transcription	Brain Anterior Caudate	brain
20	chr7:150500000-150501000	Genic enhancers	Monocytes-CD14+_RO01746	blood
21	chr7:150500000-150501400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:150500200-150503000	Weak transcription	Brain Substantia Nigra	brain
23	chr7:150500400-150501600	Enhancers	Left Ventricle	heart
24	chr7:150500400-150501800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
25	chr7:150500400-150502600	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr7:150500600-150500800	Flanking Active TSS	Colonic Mucosa	Colon
27	chr7:150500600-150501400	Strong transcription	Adipose Nuclei	Adipose
28	chr7:150500600-150501400	Strong transcription	Fetal Stomach	stomach
29	chr7:150500600-150501400	Weak transcription	Small Intestine	intestine
30	chr7:150500600-150502800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr7:150500600-150503600	Weak transcription	Stomach Mucosa	stomach

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