Variant report

Variant	rs74107499
Chromosome Location	chr12:75356197-75356198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11180305	0.85[AFR][1000 genomes]
rs11180306	0.95[AFR][1000 genomes]
rs11180309	0.95[AFR][1000 genomes]
rs11180310	0.95[AFR][1000 genomes]
rs12230187	0.88[AFR][1000 genomes]
rs1526811	0.95[AFR][1000 genomes]
rs60280721	0.95[AFR][1000 genomes]
rs60820687	1.00[AMR][1000 genomes]
rs74107412	1.00[AMR][1000 genomes]
rs74107414	1.00[AMR][1000 genomes]
rs74107484	1.00[AMR][1000 genomes]
rs74107497	0.83[AFR][1000 genomes]
rs74108145	0.95[AFR][1000 genomes]
rs74108146	0.95[AFR][1000 genomes]
rs74110804	0.95[AFR][1000 genomes]
rs74110806	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524456	chr12:75162157-75405957	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899307	chr12:75221397-75479379	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv832461	chr12:75279973-75433102	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv522290	chr12:75335027-75514623	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:75352800-75357000	Weak transcription	Stomach Mucosa	stomach
2	chr12:75355800-75357200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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