Variant report

Variant	rs74109791
Chromosome Location	chr1:112513037-112513038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:112489135..112491340-chr1:112511768..112513860,2	MCF-7	breast:
2	chr1:112389824..112391460-chr1:112512043..112514874,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11800123	1.00[AMR][1000 genomes]
rs58420091	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60522190	1.00[AMR][1000 genomes]
rs74109798	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7514018	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831048	chr1:112459697-112680279	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112501600-112514600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr1:112506600-112514200	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr1:112507000-112516600	Weak transcription	Aorta	Aorta
4	chr1:112507000-112523800	Weak transcription	Fetal Brain Female	brain
5	chr1:112507400-112518400	Weak transcription	Brain Anterior Caudate	brain
6	chr1:112507400-112519200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:112507400-112524200	Weak transcription	Brain Substantia Nigra	brain
8	chr1:112507800-112524000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:112508600-112529400	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:112509000-112513400	Enhancers	Brain Germinal Matrix	brain
11	chr1:112510200-112517800	Weak transcription	Pancreas	Pancrea
12	chr1:112510200-112529000	Weak transcription	Esophagus	oesophagus
13	chr1:112510800-112524000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:112510800-112524000	Weak transcription	Spleen	Spleen
15	chr1:112511200-112529800	Weak transcription	Colon Smooth Muscle	Colon
16	chr1:112511400-112523200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:112511400-112531000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr1:112512000-112517600	Weak transcription	Fetal Stomach	stomach
19	chr1:112512000-112518600	Weak transcription	Liver	Liver
20	chr1:112512000-112519200	Weak transcription	Brain Angular Gyrus	brain
21	chr1:112512200-112517000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr1:112512600-112514000	Weak transcription	Left Ventricle	heart
23	chr1:112512600-112516600	Weak transcription	Right Ventricle	heart
24	chr1:112513000-112513400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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