Variant report

Variant	rs74110083
Chromosome Location	chr1:112944132-112944133
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:112933537..112934140-chr1:112943678..112944339,2	K562	blood:
2	chr1:112935548..112944315-chr1:113002393..113010397,28	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134245	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55831209	0.89[AFR][1000 genomes]
rs59562601	1.00[AFR][1000 genomes]
rs74110073	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13370	chr1:112693290-113246263	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1002971	chr1:112924725-113740584	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
3	nsv535059	chr1:112924725-113740584	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
4	nsv831081	chr1:112934920-113122640	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112939800-112944200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:112939800-112944600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:112940000-112944200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:112940000-112944600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:112940000-112945800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:112940000-112950600	Weak transcription	Lung	lung
7	chr1:112940000-112952200	Weak transcription	Esophagus	oesophagus
8	chr1:112940000-112954400	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:112940000-112956400	Weak transcription	Left Ventricle	heart
10	chr1:112940000-112961400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:112940200-112958400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:112940400-112944200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:112940400-112944200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:112940600-112945200	Weak transcription	Colon Smooth Muscle	Colon
15	chr1:112940600-112945400	Weak transcription	Fetal Heart	heart
16	chr1:112940600-112945800	Weak transcription	Ovary	ovary
17	chr1:112940600-112958800	Weak transcription	Colonic Mucosa	Colon
18	chr1:112940600-112962000	Weak transcription	Psoas Muscle	Psoas
19	chr1:112940800-112944200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr1:112940800-112946000	Weak transcription	HepG2	liver
21	chr1:112940800-112946800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:112940800-112955000	Weak transcription	Adipose Nuclei	Adipose
23	chr1:112941000-112944600	Weak transcription	HMEC	breast
24	chr1:112941000-112946400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:112941000-112946400	Weak transcription	Aorta	Aorta
26	chr1:112941000-112949000	Weak transcription	Fetal Lung	lung
27	chr1:112941000-112949000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr1:112941200-112946600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr1:112941200-112949200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:112941200-112955000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr1:112941200-112955000	Weak transcription	Fetal Kidney	kidney
32	chr1:112941400-112944200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:112941400-112944200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr1:112941400-112946000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr1:112941400-112954400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:112941400-112956400	Weak transcription	Fetal Intestine Small	intestine
37	chr1:112941400-112959400	Weak transcription	Brain Germinal Matrix	brain
38	chr1:112941600-112959600	Weak transcription	Fetal Brain Female	brain
39	chr1:112941800-112944200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:112942000-112945200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:112942200-112944200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr1:112942200-112944200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:112942200-112944400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:112942400-112944600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr1:112942400-112944800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr1:112942400-112944800	Enhancers	HUVEC	blood vessel
47	chr1:112942400-112952200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr1:112942400-112988200	Weak transcription	Small Intestine	intestine
49	chr1:112942600-112946400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr1:112942600-112947000	Weak transcription	Right Atrium	heart

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