Variant report

Variant	rs74110718
Chromosome Location	chr13:97636704-97636705
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:99)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:99 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr13:97636653-97636854	K562	blood:	n/a	n/a
2	CTCF	chr13:97636615-97636756	LNCaP	prostate:	n/a	n/a
3	CTCF	chr13:97636580-97636730	SK-N-SH_RA	brain:	n/a	n/a
4	CTCF	chr13:97636580-97636730	AoAF	blood vessel:	n/a	n/a
5	TBL1XR1	chr13:97636676-97636769	K562	blood:	n/a	n/a
6	CTCF	chr13:97636600-97636750	AG10803	skin:	n/a	n/a
7	CTCF	chr13:97636600-97636750	WERI-Rb-1	eye:	n/a	n/a
8	RAD21	chr13:97635917-97637121	SK-N-SH	brain:	n/a	n/a
9	CTCF	chr13:97636580-97636730	HCPEpiC	choroid plexus:	n/a	n/a
10	CTCF	chr13:97636600-97636750	GM12865	blood:	n/a	n/a
11	CTCF	chr13:97636660-97636810	HRE	kidney:	n/a	n/a
12	ZNF143	chr13:97636383-97636829	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr13:97636620-97636770	K562	blood:	n/a	n/a
14	CTCF	chr13:97636580-97636730	HRE	kidney:	n/a	n/a
15	CTCF	chr13:97636521-97636818	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr13:97636620-97636770	HRPEpiC	eye:	n/a	n/a
17	CTCF	chr13:97636620-97636770	AG04450	lung:	n/a	n/a
18	CTCF	chr13:97636658-97636760	NHEK	skin:	n/a	n/a
19	ARID3A	chr13:97636556-97636804	K562	blood:	n/a	n/a
20	CTCF	chr13:97636600-97636750	GM12873	blood:	n/a	n/a
21	CTCF	chr13:97636620-97636770	GM12878	blood:	n/a	n/a
22	CTCF	chr13:97636617-97636770	GM13977	blood:	n/a	n/a
23	CTCF	chr13:97636651-97636730	MCF-7	breast:	n/a	n/a
24	CTCF	chr13:97636660-97636810	HPAF	blood vessel:	n/a	n/a
25	CTCF	chr13:97636661-97636731	ProgFib	skin:	n/a	n/a
26	CTCF	chr13:97636664-97636726	A549	lung:	n/a	n/a
27	CTCF	chr13:97636580-97636730	WERI-Rb-1	eye:	n/a	n/a
28	TAL1	chr13:97636535-97636887	K562	blood:	n/a	chr13:97636714-97636732
29	CTCF	chr13:97636660-97636810	HA-sp	spinal cord:	n/a	n/a
30	CTCF	chr13:97636574-97636802	Medullo	brain:	n/a	n/a
31	TEAD4	chr13:97636464-97636923	K562	blood:	n/a	n/a
32	GATA3	chr13:97636587-97636796	SH-SY5Y	brain:	n/a	n/a
33	CTCF	chr13:97636700-97636850	HAc	cerebellar:	n/a	n/a
34	CTCF	chr13:97636600-97636750	MCF-7	breast:	n/a	n/a
35	CTCF	chr13:97636645-97636762	Gliobla	brain:	n/a	n/a
36	CTCF	chr13:97636620-97636770	HCPEpiC	choroid plexus:	n/a	n/a
37	CTCF	chr13:97636642-97636763	K562	blood:	n/a	n/a
38	CTCF	chr13:97636620-97636770	HepG2	liver:	n/a	n/a
39	CTCF	chr13:97636580-97636730	GM12870	blood:	n/a	n/a
40	CTCF	chr13:97636640-97636790	A549	lung:	n/a	n/a
41	CTCF	chr13:97636620-97636770	BE2_C	brain:	n/a	n/a
42	CTCF	chr13:97636689-97636715	Spleen_OC	spleen:	n/a	n/a
43	CTCF	chr13:97636560-97636710	GM12864	blood:	n/a	n/a
44	EP300	chr13:97635975-97637174	SK-N-SH	brain:	n/a	n/a
45	CTCF	chr13:97636625-97636731	Hela-S3	cervix:	n/a	n/a
46	CTCF	chr13:97636660-97636810	HVMF	connective:	n/a	n/a
47	CTCF	chr13:97636620-97636770	HBMEC	blood vessel:	n/a	n/a
48	CTCF	chr13:97636700-97636850	HCM	heart:	n/a	n/a
49	CTCF	chr13:97636466-97636846	K562	blood:	n/a	n/a
50	MXI1	chr13:97636124-97636991	SK-N-SH	brain:	n/a	n/a

No data

Variant related genes	Relation type
LINC00359	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61368531	0.85[AFR][1000 genomes]
rs74110715	0.92[AFR][1000 genomes]
rs74110717	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97630800-97646000	Weak transcription	Esophagus	oesophagus
2	chr13:97634600-97637200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr13:97635400-97639000	Weak transcription	Gastric	stomach
4	chr13:97635600-97637000	Enhancers	Fetal Intestine Large	intestine
5	chr13:97635600-97637000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr13:97635800-97636800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr13:97636000-97636800	Enhancers	Stomach Mucosa	stomach
8	chr13:97636000-97637000	Enhancers	Fetal Kidney	kidney
9	chr13:97636000-97637000	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr13:97636200-97636800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr13:97636200-97636800	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr13:97636200-97636800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:97636200-97636800	Active TSS	Brain Anterior Caudate	brain
14	chr13:97636200-97636800	Active TSS	GM12878-XiMat	blood
15	chr13:97636200-97637000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr13:97636200-97637000	Active TSS	Duodenum Mucosa	Duodenum
17	chr13:97636200-97637000	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr13:97636400-97636800	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr13:97636400-97636800	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr13:97636400-97636800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr13:97636400-97636800	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr13:97636400-97636800	Enhancers	Colon Smooth Muscle	Colon
23	chr13:97636400-97636800	Enhancers	Psoas Muscle	Psoas
24	chr13:97636400-97637000	Active TSS	Placenta	Placenta
25	chr13:97636400-97637600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr13:97636600-97636800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:97636600-97636800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr13:97636600-97636800	Enhancers	Adipose Nuclei	Adipose
29	chr13:97636600-97636800	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr13:97636600-97636800	Active TSS	Rectal Mucosa Donor 31	rectum
31	chr13:97636600-97636800	Enhancers	Rectal Smooth Muscle	rectum
32	chr13:97636600-97637000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr13:97636600-97637000	Bivalent Enhancer	HUVEC	blood vessel
34	chr13:97636600-97639000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr13:97636600-97646200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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