Variant report
Variant | rs74110945 |
---|---|
Chromosome Location | chr12:75849214-75849215 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11366 | 1.00[AMR][1000 genomes] |
rs55838537 | 1.00[AMR][1000 genomes] |
rs55862053 | 1.00[AMR][1000 genomes] |
rs55938346 | 1.00[AMR][1000 genomes] |
rs56198554 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs56242432 | 1.00[AMR][1000 genomes] |
rs57417036 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57936468 | 1.00[AMR][1000 genomes] |
rs60941260 | 1.00[AMR][1000 genomes] |
rs61087380 | 1.00[AMR][1000 genomes] |
rs7313298 | 1.00[AMR][1000 genomes] |
rs74108714 | 1.00[AMR][1000 genomes] |
rs74108721 | 1.00[AMR][1000 genomes] |
rs74108729 | 1.00[AMR][1000 genomes] |
rs74108751 | 1.00[AMR][1000 genomes] |
rs74108752 | 1.00[AMR][1000 genomes] |
rs74108753 | 1.00[AMR][1000 genomes] |
rs74108755 | 1.00[AMR][1000 genomes] |
rs74108756 | 1.00[AMR][1000 genomes] |
rs74108760 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74108761 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74108762 | 1.00[AMR][1000 genomes] |
rs74108767 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74108768 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74108773 | 1.00[AMR][1000 genomes] |
rs74108775 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74108779 | 1.00[AMR][1000 genomes] |
rs74108787 | 1.00[AMR][1000 genomes] |
rs74108788 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74108791 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74108803 | 1.00[AMR][1000 genomes] |
rs74108812 | 1.00[AMR][1000 genomes] |
rs74108816 | 1.00[AMR][1000 genomes] |
rs74108826 | 1.00[AMR][1000 genomes] |
rs74108833 | 1.00[AMR][1000 genomes] |
rs74108834 | 1.00[AMR][1000 genomes] |
rs74108836 | 1.00[AMR][1000 genomes] |
rs74108840 | 1.00[AMR][1000 genomes] |
rs74108903 | 1.00[AMR][1000 genomes] |
rs74109586 | 1.00[AMR][1000 genomes] |
rs74109587 | 1.00[AMR][1000 genomes] |
rs74109588 | 1.00[AMR][1000 genomes] |
rs74109589 | 1.00[AMR][1000 genomes] |
rs74109591 | 1.00[AMR][1000 genomes] |
rs74109592 | 1.00[AMR][1000 genomes] |
rs74109593 | 1.00[AMR][1000 genomes] |
rs74109746 | 1.00[AMR][1000 genomes] |
rs74109747 | 1.00[AMR][1000 genomes] |
rs74109748 | 1.00[AMR][1000 genomes] |
rs74109749 | 1.00[AMR][1000 genomes] |
rs74109754 | 1.00[AMR][1000 genomes] |
rs74109755 | 1.00[AMR][1000 genomes] |
rs74109756 | 1.00[AMR][1000 genomes] |
rs74109757 | 1.00[AMR][1000 genomes] |
rs74109762 | 1.00[AMR][1000 genomes] |
rs74109764 | 1.00[AMR][1000 genomes] |
rs74109768 | 1.00[AMR][1000 genomes] |
rs74109770 | 1.00[AMR][1000 genomes] |
rs74109771 | 1.00[AMR][1000 genomes] |
rs74109772 | 1.00[AMR][1000 genomes] |
rs74109773 | 1.00[AMR][1000 genomes] |
rs74109774 | 1.00[AMR][1000 genomes] |
rs74109776 | 1.00[AMR][1000 genomes] |
rs74109780 | 1.00[AMR][1000 genomes] |
rs74109781 | 1.00[AMR][1000 genomes] |
rs74109782 | 1.00[AMR][1000 genomes] |
rs74109785 | 1.00[AMR][1000 genomes] |
rs74109786 | 1.00[AMR][1000 genomes] |
rs74109787 | 1.00[AMR][1000 genomes] |
rs74109789 | 1.00[AMR][1000 genomes] |
rs74109790 | 1.00[AMR][1000 genomes] |
rs74110939 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74110940 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs74110966 | 1.00[AMR][1000 genomes] |
rs74110967 | 1.00[AMR][1000 genomes] |
rs74111441 | 1.00[AMR][1000 genomes] |
rs74111442 | 1.00[AMR][1000 genomes] |
rs74112439 | 1.00[AMR][1000 genomes] |
rs74112440 | 1.00[AMR][1000 genomes] |
rs74112441 | 1.00[AMR][1000 genomes] |
rs74112442 | 1.00[AMR][1000 genomes] |
rs74112443 | 1.00[AMR][1000 genomes] |
rs74112444 | 1.00[AMR][1000 genomes] |
rs74112446 | 1.00[AMR][1000 genomes] |
rs7954292 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv492067 | chr12:75415458-76077537 | Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
2 | nsv1036987 | chr12:75415532-76101559 | Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
3 | nsv899313 | chr12:75715330-76057811 | Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
4 | nsv1040583 | chr12:75742802-76360276 | Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
5 | nsv428592 | chr12:75766619-75936721 | Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
6 | nsv948653 | chr12:75773464-76220618 | Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:75846400-75849400 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
2 | chr12:75847000-75851200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
3 | chr12:75847800-75854200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
4 | chr12:75848600-75850600 | Enhancers | Primary monocytes fromperipheralblood | blood |
5 | chr12:75848600-75852000 | Enhancers | Dnd41 | blood |
6 | chr12:75848800-75849400 | Enhancers | Primary T cells effector/memory enriched fromperipheralblood | blood |
7 | chr12:75848800-75851800 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
8 | chr12:75849000-75851600 | Enhancers | Primary hematopoietic stem cells | blood |
9 | chr12:75849200-75849400 | Enhancers | Monocytes-CD14+_RO01746 | blood |
10 | chr12:75849200-75850000 | Enhancers | Placenta | Placenta |