Variant report

Variant	rs74112074
Chromosome Location	chr1:114569682-114569683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114563136..114568125-chr1:114568802..114572804,6	MCF-7	breast:
2	chr1:114569420..114571718-chr1:114573610..114578040,4	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12085271	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752424	chr1:114189958-114712958	Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv2754686	chr1:114531958-114602958	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114565200-114571000	Enhancers	HSMMtube	muscle
2	chr1:114566800-114570800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:114566800-114574400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:114567000-114572800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:114567000-114575200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:114567200-114573000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:114567200-114575000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:114567800-114569800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:114567800-114570200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr1:114567800-114573600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:114568200-114569800	Enhancers	Psoas Muscle	Psoas
12	chr1:114568200-114571400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr1:114568400-114569800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:114568400-114570400	Enhancers	HSMM	muscle
15	chr1:114568400-114570800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:114568600-114569800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr1:114569400-114569800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:114569400-114570400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr1:114569600-114569800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:114569600-114569800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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