Variant report

Variant	rs74112566
Chromosome Location	chr10:6452000-6452001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6243567..6245351-chr10:6449520..6452478,2	K562	blood:
2	chr10:6447268..6450081-chr10:6450323..6453408,3	K562	blood:

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs602419	0.82[AMR][1000 genomes]
rs631670	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6443400-6452000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:6444000-6452000	Weak transcription	Brain Anterior Caudate	brain
3	chr10:6444000-6452000	Weak transcription	Right Ventricle	heart
4	chr10:6444000-6452400	Weak transcription	Right Atrium	heart
5	chr10:6444200-6452000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:6445600-6452000	Weak transcription	Psoas Muscle	Psoas
7	chr10:6446000-6452000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:6449600-6452000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:6449600-6452600	Weak transcription	Pancreas	Pancrea
10	chr10:6450600-6454000	Enhancers	Fetal Lung	lung
11	chr10:6450800-6452000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:6450800-6452000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:6451000-6452000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr10:6451000-6452000	Enhancers	Dnd41	blood
15	chr10:6451000-6452800	Enhancers	Fetal Stomach	stomach
16	chr10:6451400-6452000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr10:6451400-6452000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:6451400-6452000	Enhancers	Rectal Smooth Muscle	rectum
19	chr10:6451400-6452400	Flanking Active TSS	Fetal Thymus	thymus
20	chr10:6451400-6452400	Active TSS	Thymus	Thymus
21	chr10:6451400-6452800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:6451400-6452800	Enhancers	Fetal Muscle Leg	muscle
23	chr10:6451400-6453600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr10:6451600-6452000	Enhancers	Primary T cells from cord blood	blood
25	chr10:6451600-6452800	Enhancers	Adipose Nuclei	Adipose
26	chr10:6451600-6452800	Enhancers	HSMM	muscle
27	chr10:6451600-6453200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr10:6451600-6453200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr10:6451600-6453400	Enhancers	Colon Smooth Muscle	Colon
30	chr10:6451600-6453800	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr10:6451800-6452000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:6451800-6452000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:6451800-6452000	Enhancers	Stomach Smooth Muscle	stomach
34	chr10:6451800-6452200	Enhancers	Primary hematopoietic stem cells	blood
35	chr10:6451800-6452200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr10:6451800-6452200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:6451800-6452200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:6451800-6452400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr10:6451800-6452400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:6451800-6452400	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr10:6451800-6452400	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr10:6451800-6452400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr10:6451800-6452400	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr10:6451800-6452400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr10:6451800-6452400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr10:6451800-6452400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:6451800-6452400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:6451800-6452400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:6451800-6452400	Enhancers	Fetal Kidney	kidney
50	chr10:6451800-6452400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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