Variant report

Variant	rs74114084
Chromosome Location	chr10:3998225-3998226
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3990406..3992455-chr10:3997904..3999477,2	K562	blood:
2	chr10:3825924..3829371-chr10:3995503..3998551,3	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55702286	1.00[AMR][1000 genomes]
rs55960727	1.00[AMR][1000 genomes]
rs74114085	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3981800-4001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:3990000-3998400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:3993800-4001800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:3996800-3998400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:3996800-3998600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:3997000-3998600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:3997000-3998800	Enhancers	Fetal Muscle Trunk	muscle
8	chr10:3997400-3998600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr10:3997400-3998800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr10:3997400-3998800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:3997600-3998400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:3997600-3998600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr10:3997600-3998600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:3997600-3998600	Enhancers	Fetal Muscle Leg	muscle
15	chr10:3997800-3999000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:3997800-3999000	Enhancers	Placenta	Placenta
17	chr10:3997800-4001600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:3998000-3998400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr10:3998000-3998600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:3998000-3998600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:3998000-4002800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:3998200-3998600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:3998200-3998600	Enhancers	Ovary	ovary

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