Variant report
| Variant | rs74114507 |
|---|---|
| Chromosome Location | chr1:119344979-119344980 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-TBX15-3 | chr1:119344764-119345036 | NONHSAT005513 |
| 2 | lnc-TBX15-3 | chr1:119344490-119345039 | NONHSAT005512 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs56281107 | 1.00[AMR][1000 genomes] |
| rs57286151 | 1.00[AMR][1000 genomes] |
| rs57700973 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57767525 | 1.00[AMR][1000 genomes] |
| rs58060170 | 1.00[AMR][1000 genomes] |
| rs58275617 | 1.00[AMR][1000 genomes] |
| rs58620405 | 1.00[AMR][1000 genomes] |
| rs58914587 | 1.00[AMR][1000 genomes] |
| rs58936827 | 1.00[AMR][1000 genomes] |
| rs61064384 | 1.00[AMR][1000 genomes] |
| rs61158635 | 1.00[AMR][1000 genomes] |
| rs61347146 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73005255 | 1.00[AMR][1000 genomes] |
| rs73005256 | 1.00[AMR][1000 genomes] |
| rs73005263 | 1.00[AMR][1000 genomes] |
| rs73005283 | 1.00[AMR][1000 genomes] |
| rs73005682 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73005689 | 0.83[AFR][1000 genomes] |
| rs73005691 | 1.00[AMR][1000 genomes] |
| rs73016762 | 1.00[AMR][1000 genomes] |
| rs73016774 | 1.00[AMR][1000 genomes] |
| rs73020856 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74116009 | 1.00[AMR][1000 genomes] |
| rs7543504 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3494191 | chr1:118772550-119719548 | Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 2 | esv3494192 | chr1:118772550-119719548 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 3 | nsv997707 | chr1:119199568-119595949 | Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv2750799 | chr1:119229257-119382227 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv831181 | chr1:119340175-119529347 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
