Variant report

Variant	rs74114548
Chromosome Location	chr10:6227557-6227558
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6227014..6229747-chr10:6234825..6236632,2	MCF-7	breast:
2	chr10:6214505..6218231-chr10:6225488..6229463,4	K562	blood:
3	chr10:6225709..6229406-chr10:6233017..6236048,4	K562	blood:
4	chr10:6225709..6229798-chr10:6232088..6236048,5	K562	blood:
5	chr10:6226873..6229406-chr10:6244259..6247053,2	MCF-7	breast:
6	chr10:6213961..6227951-chr10:6240689..6247831,28	MCF-7	breast:
7	chr10:6227022..6228926-chr10:6244345..6246649,2	K562	blood:
8	chr10:6227537..6229676-chr10:6232750..6234634,2	MCF-7	breast:
9	chr10:6226744..6228554-chr10:6230060..6232211,2	MCF-7	breast:
10	chr10:6223034..6224865-chr10:6226037..6228373,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000213994	Chromatin interaction
ENSG00000170525	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55778376	1.00[AMR][1000 genomes]
rs55824986	1.00[AMR][1000 genomes]
rs586731	1.00[AMR][1000 genomes]
rs59586022	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
6	nsv894821	chr10:6210740-6228226	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv894822	chr10:6210740-6228226	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv466725	chr10:6213807-6228226	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv549910	chr10:6213807-6228226	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv894823	chr10:6213960-6228226	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv894824	chr10:6213980-6228226	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv894826	chr10:6214060-6228226	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv894828	chr10:6215091-6228226	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv894830	chr10:6215257-6228226	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv894831	chr10:6215257-6236332	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1041039	chr10:6217724-6354858	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6207000-6244400	Weak transcription	Hela-S3	cervix
2	chr10:6214200-6239800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:6215000-6237200	Weak transcription	Primary B cells from cord blood	blood
4	chr10:6216200-6237400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:6216600-6230000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr10:6218800-6227800	Weak transcription	NHDF-Ad	bronchial
7	chr10:6219000-6240600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:6219200-6228200	Weak transcription	HMEC	breast
9	chr10:6219200-6228200	Weak transcription	NH-A	brain
10	chr10:6219200-6232800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr10:6219200-6236400	Weak transcription	Primary T cells from cord blood	blood
12	chr10:6219200-6240600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:6219200-6242200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:6219200-6242400	Weak transcription	NHEK	skin
15	chr10:6220200-6228200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:6220400-6233200	Weak transcription	NHLF	lung
17	chr10:6220400-6242600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:6220800-6237200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:6221600-6230200	Weak transcription	Right Atrium	heart
20	chr10:6222800-6242800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:6224400-6228200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:6224600-6242000	Weak transcription	A549	lung
23	chr10:6224800-6230000	Weak transcription	Fetal Heart	heart
24	chr10:6224800-6232200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:6224800-6232800	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:6224800-6233200	Weak transcription	Fetal Stomach	stomach
27	chr10:6224800-6236600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:6224800-6242200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:6225000-6227800	Weak transcription	Psoas Muscle	Psoas
30	chr10:6225000-6233200	Weak transcription	Lung	lung
31	chr10:6225000-6233400	Weak transcription	Left Ventricle	heart
32	chr10:6225000-6233400	Weak transcription	Pancreas	Pancrea
33	chr10:6225000-6233600	Weak transcription	HSMMtube	muscle
34	chr10:6225000-6234000	Weak transcription	Colonic Mucosa	Colon
35	chr10:6225200-6233800	Weak transcription	Small Intestine	intestine
36	chr10:6225400-6228200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:6225400-6228200	Weak transcription	Dnd41	blood
38	chr10:6225400-6228200	Weak transcription	HSMM	muscle
39	chr10:6225400-6228400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:6225400-6228400	Weak transcription	Adipose Nuclei	Adipose
41	chr10:6225400-6233600	Weak transcription	Brain Angular Gyrus	brain
42	chr10:6225400-6233600	Weak transcription	Fetal Thymus	thymus
43	chr10:6225400-6233600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr10:6225400-6237200	Weak transcription	Thymus	Thymus
45	chr10:6225600-6228200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:6225600-6228800	Weak transcription	Fetal Muscle Leg	muscle
47	chr10:6225600-6234400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr10:6226400-6231200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr10:6226800-6227600	Enhancers	Placenta	Placenta
50	chr10:6227000-6227600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links