Variant report

Variant	rs74118437
Chromosome Location	chr1:155273188-155273189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155242743..155244954-chr1:155272841..155275388,3	K562	blood:
2	chr1:155242743..155244503-chr1:155272841..155275388,2	K562	blood:
3	chr1:155187979..155190547-chr1:155272522..155275143,2	K562	blood:
4	chr1:155258490..155260000-chr1:155271609..155274167,2	K562	blood:
5	chr1:155241917..155244553-chr1:155272889..155274441,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176444	Chromatin interaction
ENSG00000160766	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs34869594	1.00[AMR][1000 genomes]
rs41264235	1.00[AMR][1000 genomes]
rs57041449	1.00[AMR][1000 genomes]
rs57075171	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74118442	1.00[AMR][1000 genomes]
rs74118444	1.00[AMR][1000 genomes]
rs74118445	1.00[AMR][1000 genomes]
rs74118446	1.00[AMR][1000 genomes]
rs74118447	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74118448	1.00[AMR][1000 genomes]
rs74118475	1.00[AMR][1000 genomes]
rs8177962	1.00[AMR][1000 genomes]
rs8177967	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831614	chr1:155094978-155275031	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	434 gene(s)	inside rSNPs	diseases
2	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
3	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
4	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
5	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
6	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
7	nsv831636	chr1:155219223-155444864	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
8	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155265400-155277800	Weak transcription	Right Atrium	heart
2	chr1:155267800-155276000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:155270600-155275800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:155270800-155274200	Weak transcription	Colonic Mucosa	Colon
5	chr1:155270800-155278600	Weak transcription	Small Intestine	intestine
6	chr1:155271200-155274400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:155271200-155274400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:155271400-155274400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr1:155271400-155274400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:155271800-155273800	Weak transcription	Liver	Liver
11	chr1:155271800-155274400	Weak transcription	Fetal Intestine Small	intestine
12	chr1:155271800-155275800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:155271800-155276000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:155271800-155276800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:155271800-155277400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr1:155272000-155273200	Enhancers	K562	blood
17	chr1:155272000-155274400	Weak transcription	Fetal Intestine Large	intestine
18	chr1:155272600-155274200	Enhancers	HepG2	liver
19	chr1:155272600-155277800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr1:155273000-155275200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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