Variant report

Variant	rs74118979
Chromosome Location	chr1:166098565-166098566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57219135	1.00[AMR][1000 genomes]
rs59059310	1.00[AMR][1000 genomes]
rs74118970	1.00[AMR][1000 genomes]
rs74118971	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74118973	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74118974	1.00[AMR][1000 genomes]
rs74118975	1.00[AMR][1000 genomes]
rs74118978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74118980	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74118986	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74118987	1.00[AMR][1000 genomes]
rs74118991	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166080800-166104200	Weak transcription	Pancreas	Pancrea
2	chr1:166083000-166110800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:166093200-166102400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:166096400-166102200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:166097200-166099200	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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