Variant report

Variant	rs74123006
Chromosome Location	chr1:168814777-168814778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs74121377	1.00[AFR][1000 genomes]
rs74121397	1.00[AFR][1000 genomes]
rs74121402	1.00[AFR][1000 genomes]
rs74123007	1.00[AFR][1000 genomes]
rs74123009	1.00[AFR][1000 genomes]
rs74123058	1.00[AFR][1000 genomes]
rs74123071	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168810400-168816000	Enhancers	Stomach Mucosa	stomach
2	chr1:168811400-168816200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr1:168812400-168816000	Enhancers	Fetal Brain Male	brain
4	chr1:168812600-168817800	Weak transcription	Psoas Muscle	Psoas
5	chr1:168813000-168817800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:168813600-168814800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:168814400-168815000	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr1:168814400-168815200	Enhancers	Lung	lung
9	chr1:168814400-168815200	Enhancers	K562	blood
10	chr1:168814400-168816000	Enhancers	Fetal Heart	heart
11	chr1:168814600-168815200	Enhancers	Fetal Lung	lung
12	chr1:168814600-168815200	Enhancers	Gastric	stomach
13	chr1:168814600-168815200	Enhancers	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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