Variant report

Variant	rs74123917
Chromosome Location	chr10:21521016-21521017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10219082	0.89[ASN][1000 genomes]
rs10828212	0.89[ASN][1000 genomes]
rs10828213	0.89[ASN][1000 genomes]
rs10828214	0.89[ASN][1000 genomes]
rs10828215	0.89[ASN][1000 genomes]
rs10828217	0.89[ASN][1000 genomes]
rs10828218	0.89[ASN][1000 genomes]
rs10828221	0.89[ASN][1000 genomes]
rs10828222	0.89[ASN][1000 genomes]
rs11012582	0.89[ASN][1000 genomes]
rs11012592	0.86[AFR][1000 genomes]
rs11498364	1.00[ASN][1000 genomes]
rs11813348	0.89[ASN][1000 genomes]
rs12244732	1.00[ASN][1000 genomes]
rs12252629	1.00[ASN][1000 genomes]
rs1600992	0.89[ASN][1000 genomes]
rs55928379	0.94[EUR][1000 genomes]
rs56882152	0.94[EUR][1000 genomes]
rs59811250	0.89[ASN][1000 genomes]
rs60959763	0.89[ASN][1000 genomes]
rs7075704	0.89[ASN][1000 genomes]
rs7094223	0.89[ASN][1000 genomes]
rs74123914	0.94[EUR][1000 genomes]
rs74123915	0.94[EUR][1000 genomes]
rs74123916	0.94[EUR][1000 genomes]
rs7905100	0.89[ASN][1000 genomes]
rs9988744	0.89[ASN][1000 genomes]
rs9988747	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv508573	chr10:21457005-21525646	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv971871	chr10:21460392-21579987	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21502600-21522000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:21512600-21521400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:21520600-21521200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:21520800-21521800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:21521000-21522000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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