Variant report

Variant	rs74124054
Chromosome Location	chr10:25810640-25810641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16926075	1.00[AMR][1000 genomes]
rs16926077	1.00[AMR][1000 genomes]
rs16926082	1.00[AMR][1000 genomes]
rs1981118	1.00[AMR][1000 genomes]
rs57222731	1.00[AMR][1000 genomes]
rs57418758	1.00[AMR][1000 genomes]
rs58303369	1.00[AMR][1000 genomes]
rs61333610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124059	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124062	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124063	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124068	1.00[AMR][1000 genomes]
rs74126217	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25792800-25811600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:25810600-25812200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links