Variant report

Variant	rs74124402
Chromosome Location	chr1:150179792-150179793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57793626	0.94[AFR][1000 genomes]
rs61296808	1.00[AFR][1000 genomes]
rs61682354	0.94[AFR][1000 genomes]
rs74124607	0.84[AFR][1000 genomes]
rs74126627	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150179200-150180200	Enhancers	Fetal Intestine Large	intestine
2	chr1:150179200-150180200	Enhancers	Stomach Mucosa	stomach
3	chr1:150179400-150180200	Enhancers	Fetal Intestine Small	intestine
4	chr1:150179400-150180200	Enhancers	HepG2	liver
5	chr1:150179600-150180200	Enhancers	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links