Variant report

Variant	rs74124662
Chromosome Location	chr1:161175892-161175893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161174340..161177261-chr1:161184177..161187109,2	K562	blood:
2	chr1:161145883..161148987-chr1:161172798..161176306,4	K562	blood:
3	chr1:161175566..161178282-chr1:161184177..161186435,3	K562	blood:
4	chr1:161173745..161175972-chr1:161369633..161372071,2	K562	blood:
5	chr1:161173950..161176366-chr1:161191214..161193773,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158869	Chromatin interaction
ENSG00000206921	Chromatin interaction
ENSG00000158874	Chromatin interaction
ENSG00000158850	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11265565	1.00[EUR][1000 genomes]
rs74124656	1.00[EUR][1000 genomes]
rs74124657	1.00[EUR][1000 genomes]
rs74124660	1.00[EUR][1000 genomes]
rs74124668	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161172800-161176200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:161172800-161176200	Weak transcription	Aorta	Aorta
3	chr1:161172800-161186800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:161172800-161193600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr1:161173000-161176200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:161173000-161176400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:161173000-161176600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr1:161173000-161179800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:161173200-161177200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:161173400-161176200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:161173400-161176200	Weak transcription	A549	lung
12	chr1:161173400-161176200	Strong transcription	Osteobl	bone
13	chr1:161173400-161177400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
14	chr1:161173400-161177600	Strong transcription	Brain Inferior Temporal Lobe	brain
15	chr1:161173400-161179400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:161173400-161179600	Strong transcription	Fetal Intestine Large	intestine
17	chr1:161173400-161179800	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr1:161173400-161179800	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:161173400-161179800	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:161173400-161185200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:161173400-161185400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:161173600-161176000	Weak transcription	Stomach Mucosa	stomach
23	chr1:161173600-161176200	Weak transcription	Gastric	stomach
24	chr1:161173600-161176200	Weak transcription	Psoas Muscle	Psoas
25	chr1:161173600-161176200	Strong transcription	NH-A	brain
26	chr1:161173600-161177200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr1:161173600-161177200	Strong transcription	Fetal Kidney	kidney
28	chr1:161173600-161177400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr1:161173600-161177400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr1:161173600-161177600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr1:161173600-161179200	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr1:161173600-161179800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr1:161173600-161184400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr1:161173600-161184600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr1:161173600-161184800	Strong transcription	Fetal Muscle Trunk	muscle
36	chr1:161173600-161185000	Strong transcription	Fetal Muscle Leg	muscle
37	chr1:161173800-161176000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr1:161173800-161176000	Weak transcription	Adipose Nuclei	Adipose
39	chr1:161173800-161176000	Weak transcription	Pancreas	Pancrea
40	chr1:161173800-161176000	Weak transcription	Thymus	Thymus
41	chr1:161173800-161176000	Strong transcription	NHDF-Ad	bronchial
42	chr1:161173800-161176200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr1:161173800-161176200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:161173800-161176200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr1:161173800-161176200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:161173800-161176200	Strong transcription	Brain Anterior Caudate	brain
47	chr1:161173800-161176200	Weak transcription	Esophagus	oesophagus
48	chr1:161173800-161176200	Weak transcription	Left Ventricle	heart
49	chr1:161173800-161176200	Weak transcription	Lung	lung
50	chr1:161173800-161176200	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links