Variant report

Variant	rs74124691
Chromosome Location	chr1:161214988-161214989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs34887199	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55880062	1.00[AMR][1000 genomes]
rs56758346	1.00[AMR][1000 genomes]
rs57560345	1.00[AMR][1000 genomes]
rs61642842	1.00[AMR][1000 genomes]
rs74124650	1.00[AMR][1000 genomes]
rs74124652	1.00[AMR][1000 genomes]
rs74124653	1.00[AMR][1000 genomes]
rs74124672	1.00[AMR][1000 genomes]
rs74124697	1.00[AMR][1000 genomes]
rs74124950	1.00[AMR][1000 genomes]
rs74127620	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161214200-161215000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:161214200-161215600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:161214600-161215000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:161214600-161215000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:161214600-161215000	Enhancers	HMEC	breast
6	chr1:161214600-161215200	Enhancers	Stomach Mucosa	stomach
7	chr1:161214600-161215200	Enhancers	NHEK	skin
8	chr1:161214600-161215600	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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