Variant report

Variant	rs74126468
Chromosome Location	chr10:26620948-26620949
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs12264198	0.86[ASN][1000 genomes]
rs16926833	0.86[ASN][1000 genomes]
rs16926835	0.86[ASN][1000 genomes]
rs2003243	0.86[ASN][1000 genomes]
rs2003244	0.86[ASN][1000 genomes]
rs2003245	0.86[ASN][1000 genomes]
rs2150157	0.86[ASN][1000 genomes]
rs2150159	0.86[ASN][1000 genomes]
rs2150160	0.86[ASN][1000 genomes]
rs2368166	0.86[ASN][1000 genomes]
rs2887178	0.86[ASN][1000 genomes]
rs56067241	0.86[ASN][1000 genomes]
rs56071816	0.86[ASN][1000 genomes]
rs56271228	0.86[ASN][1000 genomes]
rs56965874	0.86[ASN][1000 genomes]
rs58259479	0.86[ASN][1000 genomes]
rs58499531	0.86[ASN][1000 genomes]
rs59625980	0.86[ASN][1000 genomes]
rs60153816	0.86[ASN][1000 genomes]
rs60237056	0.86[ASN][1000 genomes]
rs60376155	0.86[ASN][1000 genomes]
rs60405682	0.86[ASN][1000 genomes]
rs60579755	0.86[ASN][1000 genomes]
rs61268980	0.86[ASN][1000 genomes]
rs61292676	0.86[ASN][1000 genomes]
rs61361088	0.86[ASN][1000 genomes]
rs61397455	0.86[ASN][1000 genomes]
rs6482552	0.86[ASN][1000 genomes]
rs6482553	0.86[ASN][1000 genomes]
rs6482554	0.86[ASN][1000 genomes]
rs7076001	0.86[ASN][1000 genomes]
rs74126413	0.86[ASN][1000 genomes]
rs74126414	0.86[ASN][1000 genomes]
rs74126416	0.86[ASN][1000 genomes]
rs74126417	0.86[ASN][1000 genomes]
rs74126418	0.86[ASN][1000 genomes]
rs74126419	0.86[ASN][1000 genomes]
rs74126420	0.86[ASN][1000 genomes]
rs74126423	0.86[ASN][1000 genomes]
rs74126424	0.86[ASN][1000 genomes]
rs74126425	0.86[ASN][1000 genomes]
rs74126426	0.86[ASN][1000 genomes]
rs74126427	0.86[ASN][1000 genomes]
rs74126428	0.86[ASN][1000 genomes]
rs74126429	0.86[ASN][1000 genomes]
rs74126430	0.86[ASN][1000 genomes]
rs74126431	0.86[ASN][1000 genomes]
rs74126432	0.86[ASN][1000 genomes]
rs74126433	0.86[ASN][1000 genomes]
rs74126434	0.86[ASN][1000 genomes]
rs74126435	0.86[ASN][1000 genomes]
rs74126436	0.86[ASN][1000 genomes]
rs74126437	0.86[ASN][1000 genomes]
rs74126438	0.86[ASN][1000 genomes]
rs74126439	0.86[ASN][1000 genomes]
rs74126442	0.86[ASN][1000 genomes]
rs74126443	0.86[ASN][1000 genomes]
rs74126444	0.86[ASN][1000 genomes]
rs74126445	0.86[ASN][1000 genomes]
rs74126448	0.86[ASN][1000 genomes]
rs74126449	0.86[ASN][1000 genomes]
rs74126450	0.86[ASN][1000 genomes]
rs74126451	0.86[ASN][1000 genomes]
rs74126453	0.86[ASN][1000 genomes]
rs74126454	0.86[ASN][1000 genomes]
rs74126467	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7894004	0.86[ASN][1000 genomes]
rs7899642	0.86[ASN][1000 genomes]
rs7905138	0.86[ASN][1000 genomes]
rs7907349	0.86[ASN][1000 genomes]
rs7907372	0.86[ASN][1000 genomes]
rs7908659	0.86[ASN][1000 genomes]
rs7914428	0.86[ASN][1000 genomes]
rs7915415	0.86[ASN][1000 genomes]
rs7919421	0.86[ASN][1000 genomes]
rs7921664	0.86[ASN][1000 genomes]
rs7922791	0.86[ASN][1000 genomes]
rs876845	0.86[ASN][1000 genomes]
rs876846	0.86[ASN][1000 genomes]
rs876847	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26612000-26621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:26619800-26621200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:26620000-26624200	Weak transcription	Pancreas	Pancrea
4	chr10:26620600-26621000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:26620600-26621000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links