Variant report

Variant	rs74126843
Chromosome Location	chr1:174552640-174552641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55833532	0.87[AFR][1000 genomes]
rs55896504	0.87[AFR][1000 genomes]
rs55926112	0.87[AFR][1000 genomes]
rs56314720	0.86[AFR][1000 genomes]
rs58401153	0.87[AFR][1000 genomes]
rs59323596	1.00[AFR][1000 genomes]
rs60449770	0.87[AFR][1000 genomes]
rs74126806	0.86[AFR][1000 genomes]
rs74126810	0.86[AFR][1000 genomes]
rs74126811	0.86[AFR][1000 genomes]
rs74126818	0.87[AFR][1000 genomes]
rs74126819	0.87[AFR][1000 genomes]
rs74126820	0.87[AFR][1000 genomes]
rs74126822	0.87[AFR][1000 genomes]
rs74126823	0.87[AFR][1000 genomes]
rs74126824	0.87[AFR][1000 genomes]
rs74126826	0.87[AFR][1000 genomes]
rs74126827	0.87[AFR][1000 genomes]
rs74126828	0.87[AFR][1000 genomes]
rs74126832	0.87[AFR][1000 genomes]
rs74126833	0.87[AFR][1000 genomes]
rs74126835	1.00[AFR][1000 genomes]
rs74126837	0.87[AFR][1000 genomes]
rs74126839	0.87[AFR][1000 genomes]
rs74126841	0.87[AFR][1000 genomes]
rs74126844	0.87[AFR][1000 genomes]
rs74126845	0.87[AFR][1000 genomes]
rs74126859	0.93[AFR][1000 genomes]
rs74126864	0.93[AFR][1000 genomes]
rs74126867	0.93[AFR][1000 genomes]
rs74128377	0.86[AFR][1000 genomes]
rs74128378	0.86[AFR][1000 genomes]
rs74128380	0.86[AFR][1000 genomes]
rs74128389	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014637	chr1:174265631-174826765	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv535208	chr1:174265631-174826765	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1014753	chr1:174271770-174694838	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv872555	chr1:174343705-174565720	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv2755184	chr1:174388343-174970343	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	nsv1007667	chr1:174438778-174556953	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv999295	chr1:174457532-174596961	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv534381	chr1:174468168-174656796	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2757762	chr1:174469281-174569776	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2758979	chr1:174469281-174569776	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv548196	chr1:174525135-174559121	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv947553	chr1:174548435-174554898	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2762198	chr1:174552605-174559182	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174545200-174555800	Weak transcription	Psoas Muscle	Psoas
2	chr1:174546000-174573000	Weak transcription	Left Ventricle	heart
3	chr1:174546200-174556800	Weak transcription	Primary B cells from cord blood	blood
4	chr1:174547200-174554400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:174552200-174554400	Weak transcription	Primary B cells from peripheral blood	blood

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