Variant report

Variant	rs74127149
Chromosome Location	chr10:28201798-28201799
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11817213	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242656	1.00[EUR][1000 genomes]
rs58190321	0.82[AFR][1000 genomes]
rs58502831	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59829710	1.00[EUR][1000 genomes]
rs7071498	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7083832	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7094709	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127133	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28188400-28214000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28195800-28203800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:28199600-28201800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:28199800-28202000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr10:28200000-28201800	Enhancers	Fetal Lung	lung
6	chr10:28200800-28202400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr10:28201000-28201800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:28201000-28202600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:28201200-28202000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:28201200-28202200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:28201200-28202600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:28201400-28202400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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