Variant report

Variant	rs74128192
Chromosome Location	chr10:45587029-45587030
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55641893	1.00[AMR][1000 genomes]
rs57908395	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv971917	chr10:45547355-45595482	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45586200-45588000	Enhancers	Primary hematopoietic stem cells	blood
2	chr10:45586400-45587600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:45586400-45588000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr10:45586400-45588800	Enhancers	Fetal Muscle Leg	muscle
5	chr10:45586400-45591400	Enhancers	Brain Germinal Matrix	brain
6	chr10:45586600-45587600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:45586800-45588000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr10:45586800-45588000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:45586800-45588000	Enhancers	HSMMtube	muscle
10	chr10:45586800-45589000	Enhancers	Fetal Muscle Trunk	muscle
11	chr10:45587000-45587600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:45587000-45588200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:45587000-45588800	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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