Variant report

Variant	rs74128227
Chromosome Location	chr1:152448117-152448118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13374567	0.94[AFR][1000 genomes]
rs13375087	0.96[AFR][1000 genomes]
rs16865646	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58257590	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59051498	0.94[AFR][1000 genomes]
rs60165719	0.96[AFR][1000 genomes]
rs60342461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60456652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6683531	0.96[AFR][1000 genomes]
rs74127973	0.94[AFR][1000 genomes]
rs74128215	0.96[AFR][1000 genomes]
rs74128225	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128230	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7521367	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916016	chr1:152337775-152590520	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv872443	chr1:152400055-152459747	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152447400-152450200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:152447600-152448200	ZNF genes & repeats	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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