Variant report

Variant	rs74129034
Chromosome Location	chr10:28553539-28553540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28543012..28546500-chr10:28550223..28554148,7	MCF-7	breast:
2	chr10:28550629..28558294-chr10:28588558..28593348,8	MCF-7	breast:
3	chr10:28551828..28553630-chr10:28580648..28583187,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150054	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10508737	0.83[AMR][1000 genomes]
rs12359569	0.87[AFR][1000 genomes]
rs16928617	0.83[AMR][1000 genomes]
rs16928623	0.83[AMR][1000 genomes]
rs16928649	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55872459	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56311491	0.93[EUR][1000 genomes]
rs56389449	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56413516	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv525448	chr10:28337570-28563732	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28544000-28555600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:28544200-28554600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:28550400-28553600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:28550400-28555600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:28550400-28582600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr10:28550600-28562400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:28550600-28562600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:28550600-28563600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr10:28550800-28555600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr10:28550800-28555600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr10:28551400-28563600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:28552400-28557800	Weak transcription	Fetal Intestine Small	intestine
13	chr10:28552600-28554400	Strong transcription	Primary T cells from cord blood	blood
14	chr10:28552800-28553800	Enhancers	HepG2	liver
15	chr10:28552800-28555600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:28552800-28558200	Weak transcription	NHEK	skin
17	chr10:28552800-28559000	Weak transcription	Aorta	Aorta
18	chr10:28553000-28559200	Weak transcription	Fetal Stomach	stomach
19	chr10:28553000-28570800	Weak transcription	Esophagus	oesophagus
20	chr10:28553200-28557800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:28553200-28568400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:28553400-28553600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr10:28553400-28553600	Enhancers	Primary B cells from peripheral blood	blood
24	chr10:28553400-28569600	Weak transcription	Pancreas	Pancrea

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