Variant report

Variant	rs74129042
Chromosome Location	chr10:28591198-28591199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:28570371..28575406-chr10:28590076..28593528,7	MCF-7	breast:
2	chr10:28590710..28592646-chr10:28598868..28601462,3	MCF-7	breast:
3	chr10:28548955..28550637-chr10:28589374..28591919,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150054	Chromatin interaction
ENSG00000222374	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11819234	0.88[AFR][1000 genomes]
rs12772028	0.88[AFR][1000 genomes]
rs74129037	0.88[AFR][1000 genomes]
rs74129040	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28588400-28591200	Weak transcription	Small Intestine	intestine
2	chr10:28589800-28592800	Active TSS	Stomach Smooth Muscle	stomach
3	chr10:28590400-28591200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr10:28590400-28591200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:28590400-28591200	Flanking Active TSS	Colon Smooth Muscle	Colon
6	chr10:28590400-28591200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr10:28590400-28591200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:28590400-28591400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr10:28590400-28591400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr10:28590400-28591400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:28590400-28592800	Active TSS	Aorta	Aorta
12	chr10:28590600-28591200	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr10:28590600-28591200	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr10:28590600-28591200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr10:28590600-28591400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:28590600-28591400	Bivalent/Poised TSS	Fetal Lung	lung
17	chr10:28590600-28592600	Active TSS	Brain Anterior Caudate	brain
18	chr10:28590600-28592600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:28590600-28592600	Active TSS	Colonic Mucosa	Colon
20	chr10:28590800-28591200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:28590800-28591200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:28590800-28591200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:28590800-28591200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr10:28590800-28591200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:28590800-28591200	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr10:28590800-28591200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr10:28590800-28591200	Flanking Active TSS	Placenta	Placenta
28	chr10:28590800-28591200	Flanking Active TSS	NHEK	skin
29	chr10:28590800-28591400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr10:28590800-28591400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
31	chr10:28590800-28591400	Flanking Active TSS	HMEC	breast
32	chr10:28590800-28591400	Flanking Active TSS	NH-A	brain
33	chr10:28590800-28591600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
34	chr10:28590800-28591800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:28590800-28592400	Active TSS	Brain Angular Gyrus	brain
36	chr10:28590800-28592600	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr10:28590800-28592600	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr10:28590800-28592600	Active TSS	Brain Germinal Matrix	brain
39	chr10:28590800-28592600	Active TSS	Right Ventricle	heart
40	chr10:28590800-28592800	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr10:28590800-28592800	Active TSS	Fetal Stomach	stomach
42	chr10:28590800-28592800	Active TSS	Right Atrium	heart
43	chr10:28590800-28593000	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr10:28590800-28593200	Active TSS	H1 Cell Line	embryonic stem cell
45	chr10:28591000-28591200	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:28591000-28591200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:28591000-28591200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:28591000-28591200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:28591000-28591200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr10:28591000-28591200	Active TSS	Primary T cells from cord blood	blood

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