Variant report

Variant	rs74130440
Chromosome Location	chr1:192669394-192669395
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56786813	0.87[AFR][1000 genomes]
rs61608852	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74130424	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192666800-192669400	Enhancers	HepG2	liver
2	chr1:192667600-192673000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr1:192668200-192669600	Enhancers	A549	lung
4	chr1:192668400-192670800	Weak transcription	Placenta	Placenta
5	chr1:192669000-192669800	Enhancers	NH-A	brain
6	chr1:192669000-192671400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:192669000-192672000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:192669000-192672000	Enhancers	Hela-S3	cervix
9	chr1:192669000-192673200	Enhancers	NHLF	lung
10	chr1:192669200-192672400	Enhancers	Fetal Intestine Large	intestine
11	chr1:192669200-192672400	Enhancers	Osteobl	bone
12	chr1:192669200-192672800	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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