Variant report

Variant	rs74130835
Chromosome Location	chr10:45933205-45933206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr10:45932896-45933971	K562	blood:	n/a	n/a
2	TBL1XR1	chr10:45933195-45933612	K562	blood:	n/a	n/a
3	TEAD4	chr10:45932908-45933996	K562	blood:	n/a	n/a
4	CBX3	chr10:45933128-45933528	K562	blood:	n/a	n/a
5	SPI1	chr10:45932976-45933254	K562	blood:	n/a	n/a
6	SPI1	chr10:45932928-45933326	GM12891	blood:	n/a	n/a
7	MYC	chr10:45933202-45933377	MCF10A-Er-Src	breast:	n/a	n/a
8	SP1	chr10:45932920-45933269	HepG2	liver:	n/a	n/a
9	SPI1	chr10:45932976-45933232	K562	blood:	n/a	n/a
10	IKZF1	chr10:45933038-45933238	GM12878	blood:	n/a	n/a
11	MYC	chr10:45933048-45933492	K562	blood:	n/a	n/a
12	ZNF384	chr10:45933205-45933939	K562	blood:	n/a	n/a
13	SETDB1	chr10:45933197-45933484	U2OS	brain:	n/a	n/a
14	SPI1	chr10:45932925-45933313	GM12878	blood:	n/a	n/a
15	RCOR1	chr10:45933068-45934047	K562	blood:	n/a	n/a
16	SPI1	chr10:45932926-45933301	GM12891	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45916870..45919327-chr10:45931748..45934680,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM21C-4	chr10:45931684-45934607	NONHSAT013093

No data

Variant related genes	Relation type
ALOX5	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1811604	0.95[AFR][1000 genomes]
rs74130824	0.98[AFR][1000 genomes]
rs74130836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv895110	chr10:45912771-45953767	Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45916600-45949200	Weak transcription	Gastric	stomach
2	chr10:45921800-45933800	Weak transcription	Esophagus	oesophagus
3	chr10:45925000-45940600	Weak transcription	Fetal Intestine Small	intestine
4	chr10:45925000-45949200	Weak transcription	Lung	lung
5	chr10:45925800-45936200	Weak transcription	Placenta	Placenta
6	chr10:45928800-45951000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:45929000-45934800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:45929200-45951600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:45929600-45934600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:45930200-45934200	Weak transcription	Spleen	Spleen
11	chr10:45930200-45938400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:45930600-45934200	Weak transcription	Thymus	Thymus
13	chr10:45930800-45934000	ZNF genes & repeats	GM12878-XiMat	blood
14	chr10:45930800-45935200	Weak transcription	Fetal Thymus	thymus
15	chr10:45930800-45935400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
16	chr10:45932400-45933600	Enhancers	Primary B cells from peripheral blood	blood
17	chr10:45932400-45933800	Enhancers	HepG2	liver
18	chr10:45932400-45934000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:45932400-45934800	Enhancers	Pancreas	Pancrea
20	chr10:45933000-45934000	Genic enhancers	Primary B cells from cord blood	blood
21	chr10:45933200-45933400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr10:45933200-45933600	Flanking Active TSS	K562	blood
23	chr10:45933200-45934000	Enhancers	Primary hematopoietic stem cells	blood
24	chr10:45933200-45934200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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