Variant report

Variant	rs74131660
Chromosome Location	chr1:184352565-184352566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:184352344-184352906	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184349850..184351916-chr1:184352544..184355292,2	K562	blood:
2	chr1:184347794..184350297-chr1:184351548..184353524,2	MCF-7	breast:

Variant related genes	Relation type
C1orf21	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16823167	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58553309	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6688083	1.00[AMR][1000 genomes]
rs74131687	1.00[AMR][1000 genomes]
rs74134113	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184337400-184355000	Weak transcription	Psoas Muscle	Psoas
2	chr1:184346000-184355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:184346200-184355000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:184348400-184355000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:184348800-184355000	Weak transcription	Fetal Heart	heart
6	chr1:184348800-184355000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:184349000-184355000	Weak transcription	NHLF	lung
8	chr1:184350400-184355000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:184350400-184355000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:184350600-184352800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:184350600-184354600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:184350600-184355000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr1:184351800-184353000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr1:184351800-184353800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr1:184351800-184354000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:184351800-184354600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:184351800-184354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:184352000-184354400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr1:184352200-184352800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr1:184352200-184354400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr1:184352200-184355000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:184352400-184352600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:184352400-184352600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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