Variant report

Variant	rs74132249
Chromosome Location	chr1:179714187-179714188
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179713754..179715803-chr1:179723110..179724876,2	K562	blood:
2	chr1:179712622..179714301-chr1:179716150..179718228,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10798715	0.94[EUR][1000 genomes]
rs11577101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55686884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56027569	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74132245	0.80[AFR][1000 genomes]
rs74132253	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548339	chr1:179686244-179722827	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179711400-179714400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr1:179711800-179714200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr1:179712600-179714400	Bivalent Enhancer	Fetal Brain Male	brain
4	chr1:179713000-179714200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
5	chr1:179713000-179715200	Bivalent/Poised TSS	Fetal Thymus	thymus
6	chr1:179713400-179714200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
7	chr1:179713400-179714600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr1:179713400-179715200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:179713600-179714200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:179713600-179714200	Bivalent Enhancer	Fetal Heart	heart
11	chr1:179713600-179714400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
12	chr1:179713600-179714600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:179713600-179715000	Bivalent Enhancer	Fetal Intestine Small	intestine
14	chr1:179713800-179714200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr1:179713800-179714200	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr1:179713800-179714400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr1:179713800-179714400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:179713800-179714600	Bivalent Enhancer	Fetal Stomach	stomach
19	chr1:179714000-179714200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
20	chr1:179714000-179714200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
21	chr1:179714000-179714200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
22	chr1:179714000-179714200	Bivalent Enhancer	Fetal Lung	lung
23	chr1:179714000-179714400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
24	chr1:179714000-179714400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:179714000-179714400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

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