Variant report

Variant	rs74132292
Chromosome Location	chr1:185343587-185343588
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SWT1-1	chr1:185343529-185344123	XLOC_000494

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16823977	1.00[AMR][1000 genomes]
rs74132220	1.00[AMR][1000 genomes]
rs74132221	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv2756872	chr1:185293197-185345771	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2758981	chr1:185293197-185345771	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008247	chr1:185321360-185345771	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185335000-185345000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:185336600-185345000	Weak transcription	Right Atrium	heart
3	chr1:185342000-185347400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:185342400-185343600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:185342400-185343600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:185342400-185345200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:185342400-185346400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr1:185342600-185343800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:185342800-185343600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:185342800-185345200	Enhancers	HMEC	breast
11	chr1:185343000-185343600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr1:185343000-185343600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr1:185343000-185343600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:185343000-185343600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:185343000-185343600	Enhancers	HSMM	muscle
16	chr1:185343000-185344000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr1:185343000-185344000	Flanking Active TSS	HUVEC	blood vessel
18	chr1:185343000-185345200	Enhancers	NHEK	skin
19	chr1:185343000-185347200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:185343200-185343800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:185343200-185346400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:185343400-185343800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:185343400-185343800	Enhancers	NHDF-Ad	bronchial
24	chr1:185343400-185343800	Enhancers	Osteobl	bone
25	chr1:185343400-185344000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:185343400-185344400	Weak transcription	Primary B cells from cord blood	blood
27	chr1:185343400-185344600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr1:185343400-185344600	Enhancers	NH-A	brain
29	chr1:185343400-185345200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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