Variant report

Variant	rs74132770
Chromosome Location	chr1:183994767-183994768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:183994649..183996191-chr1:184020273..184021873,2	MCF-7	breast:
2	chr1:183993826..183996650-chr1:184457507..184459731,2	K562	blood:
3	chr1:183993100..183996094-chr1:184020312..184022117,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198860	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs55734904	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56124216	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57744980	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59701007	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60210878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60591205	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60616956	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74130994	0.91[AMR][1000 genomes]
rs74130996	0.91[AMR][1000 genomes]
rs74130998	0.91[AMR][1000 genomes]
rs74130999	0.91[AMR][1000 genomes]
rs74131000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74131001	0.91[AMR][1000 genomes]
rs74132762	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132763	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132764	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132768	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132769	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132771	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132773	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132774	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132775	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132776	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132777	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74132778	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133803	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133804	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv533206	chr1:183861204-184091272	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv872583	chr1:183955574-184015663	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:183985600-184002800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:183986200-184001000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:183988400-184003200	Enhancers	Brain Cingulate Gyrus	brain
4	chr1:183988400-184003400	Enhancers	Brain Substantia Nigra	brain
5	chr1:183989200-183997400	Enhancers	Brain Hippocampus Middle	brain
6	chr1:183989200-183999600	Enhancers	Brain Anterior Caudate	brain
7	chr1:183989600-183995800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:183989600-183998600	Enhancers	Colon Smooth Muscle	Colon
9	chr1:183989600-184000000	Enhancers	Fetal Heart	heart
10	chr1:183989800-183995600	Enhancers	Fetal Stomach	stomach
11	chr1:183990400-183995200	Enhancers	Fetal Kidney	kidney
12	chr1:183990400-183998200	Enhancers	Fetal Lung	lung
13	chr1:183990800-183995000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:183992600-183998400	Weak transcription	Left Ventricle	heart
15	chr1:183992800-183995000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:183992800-183997600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:183992800-184005200	Weak transcription	Gastric	stomach
18	chr1:183993000-183995200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:183993000-183995200	Enhancers	NHLF	lung
20	chr1:183993200-183995000	Enhancers	Stomach Smooth Muscle	stomach
21	chr1:183993600-183995200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:183993600-184003200	Enhancers	Brain Angular Gyrus	brain
23	chr1:183993800-183995000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:183993800-183995000	Enhancers	Hela-S3	cervix
25	chr1:183993800-183995400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:183994000-183995000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
27	chr1:183994000-183995000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr1:183994000-183995000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr1:183994000-183995000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:183994000-183995000	Enhancers	Pancreas	Pancrea
31	chr1:183994000-183995000	Enhancers	Psoas Muscle	Psoas
32	chr1:183994000-183995000	Enhancers	NHDF-Ad	bronchial
33	chr1:183994000-183995200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr1:183994000-183995200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
35	chr1:183994000-183995200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
36	chr1:183994000-183995200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr1:183994000-183995200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:183994000-183995200	Enhancers	Rectal Smooth Muscle	rectum
39	chr1:183994000-183995200	Enhancers	HSMMtube	muscle
40	chr1:183994000-183995200	Enhancers	NH-A	brain
41	chr1:183994000-183995400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
42	chr1:183994000-183995400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr1:183994000-183995400	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr1:183994000-183995600	Enhancers	HepG2	liver
45	chr1:183994000-183995800	Enhancers	Fetal Muscle Leg	muscle
46	chr1:183994000-183997200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr1:183994000-183997600	Enhancers	Brain Germinal Matrix	brain
48	chr1:183994200-183994800	Enhancers	H9 Cell Line	embryonic stem cell
49	chr1:183994200-183994800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:183994200-183994800	Flanking Active TSS	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links